Alexei V. Savchenko: search on Z-Library

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1

Molecular mechanisms of vancomycin resistance

Stogios, Peter J, Savchenko, Alexei

Journal:

Protein Science

Year:

2020

Language:

english

File:

PDF, 3.18 MB

english, 2020

2

Plazomicin retains antibiotic activity against most aminoglycoside modifying enzymes

Cox, Georgina, Ejim, Linda, Stogios, Peter J, Koteva, Kalinka, Bordeleau, Emily, Evdokimova, Elena, Sieron, Arthur Oscar, Savchenko, Alexei, Serio, Alisa W, Krause, Kevin M, Wright, Gerard D

Journal:

ACS Infectious Diseases

Year:

2018

Language:

english

File:

PDF, 4.22 MB

english, 2018

3

A penicillin-binding protein that can promote advanced-generation cephalosporin resistance and genome adaptation in the opportunistic pathogen Pseudomonas aeruginosa

Lau, Calvin Ho-Fung, DeJong, Erica N., Dussault, Forest, Carrillo, Catherine, Stogios, Peter J., Savchenko, Alexei, Topp, Edward

Journal:

International Journal of Antimicrobial Agents

Year:

2020

Language:

english

File:

PDF, 903 KB

english, 2020

4

Urgut Revisited

SAVCHENKO, Alexei

Journal:

ARAM Periodical

Year:

1996

Language:

english

File:

PDF, 1.02 MB

english, 1996

5

Structural Proteomics: Toward High-Throughput Structural Biology as a Tool in Functional Genomics

Yee, Adelinda, Pardee, Keith, Christendat, Dinesh, Savchenko, Alexei, Edwards, Aled M., Arrowsmith, Cheryl H.

Journal:

Accounts of Chemical Research

Year:

2003

Language:

english

File:

PDF, 270 KB

english, 2003

6

Thermozymes: biotechnology and structure–function relationships

J. G. Zeikus, Claire Vieille, Alexei Savchenko

Journal:

Year:

1998

Language:

english

File:

PDF, 762 KB

english, 1998

7

10.1038/37803

Kramer, Richard H., Savchenko, Alexei, Barnes, Steven

Journal:

Language:

english

File:

PDF, 330 KB

english

8

Structure and activity of the Saccharomyces cerevisiae dUTP pyrophosphatase DUT1, an essential housekeeping enzyme

Tchigvintsev, Anatoli, Singer, Alexander U., Flick, Robert, Petit, Pierre, Brown, Greg, Evdokimova, Elena, Savchenko, Alexei, Yakunin, Alexander F.

Journal:

Biochemical Journal

Year:

2011

Language:

english

File:

PDF, 1.51 MB

english, 2011

9

Pyrococcus furiosus α-Amylase Is Stabilized by Calcium and Zinc †

Savchenko, Alexei, Vieille, Claire, Kang, Suil, Zeikus, J. Gregory

Journal:

Year:

2002

Language:

english

File:

PDF, 155 KB

english, 2002

10

Biochemical and structural insights into enzymatic depolymerization of polylactic acid and other polyesters by microbial carboxylesterases

Hajighasemi, Mahbod, Nocek, Boguslaw P., Tchigvintsev, Anatoli, Brown, Greg, Flick, Robert, Xu, Xiaohui, Cui, Hong, Hai, Tran, Joachimiak, Andrzej, Golyshin, Peter N, Savchenko, Alexei, Edwards, Eliza

Journal:

Biomacromolecules

Year:

2016

Language:

english

File:

PDF, 3.22 MB

english, 2016

11

[Methods in Enzymology] Hyperthermophilic enzymes Part B Volume 331 || [26] Alkaline phosphatase from Thennotoga neapolitana

Savchenko, Alexei

Year:

2001

Language:

english

File:

PDF, 208 KB

english, 2001

12

L-Hydroxyproline and D-Proline Catabolism in Sinorhizobium meliloti

Chen, Siyun, White, Catharine E, diCenzo, George C, Zhang, Ye, Stogios, Peter J, Savchenko, Alexei, Finan, Turlough M.

Journal:

Journal of Bacteriology

Year:

2016

Language:

english

File:

PDF, 1.94 MB

english, 2016

13

The evolution of substrate discrimination in macrolide antibiotic resistance enzymes

Pawlowski, Andrew C., Stogios, Peter J., Koteva, Kalinka, Skarina, Tatiana, Evdokimova, Elena, Savchenko, Alexei, Wright, Gerard D.

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 1.14 MB

english, 2018

14

One-pot biocatalytic transformation of adipic acid to 6-aminocaproic acid and 1,6-hexamethylenediamine using carboxylic acid reductases and transaminases

Fedorchuk, Tatiana P., Khusnutdinova, Anna N., Evdokimova, Elena, Flick, Robert, Di Leo, Rosa, Stogios, Peter, Savchenko, Alexei, Yakunin, Alexander F.

Journal:

Journal of the American Chemical Society

Year:

2019

File:

PDF, 1.04 MB

2019

15

Toroidal Structure and DNA Cleavage by the CRISPR-Associated [4Fe-4S] Cluster Containing Cas4 Nuclease SSO0001 from Sulfolobus solfataricus

Lemak, Sofia, Beloglazova, Natalia, Nocek, Boguslaw, Skarina, Tatiana, Flick, Robert, Brown, Greg, Popovic, Ana, Joachimiak, Andrzej, Savchenko, Alexei, Yakunin, Alexander F.

Journal:

Journal of the American Chemical Society

Year:

2013

Language:

english

File:

PDF, 2.99 MB

english, 2013

16

Multiple histidines in the periplasmic domain of the S almonella enterica sensor kinase SsrA enhance signaling in response to extracellular acidification

Mulder, David T., McPhee, Joseph B., Reid-Yu, Sarah A., Stogios, Peter J., Savchenko, Alexei, Coombes, Brian K.

Journal:

Molecular Microbiology

Year:

2015

Language:

english

File:

PDF, 1.05 MB

english, 2015

17

Structural and Functional Survey of Environmental Aminoglycoside Acetyltransferases Reveals Novel Functionality of Resistance Enzymes

Xu, Zhiyu, Stogios, Peter J, Quaile, Andrew, Forsberg, Kevin, Patel, Sanket, Skarina, Tatiana, Houliston, Scott, Arrowsmith, Cheryl, Dantas, Gautam, Savchenko, Alexei

Journal:

ACS Infectious Diseases

Year:

2017

Language:

english

File:

PDF, 25.27 MB

english, 2017

18

Crystal structure of secretory protein Hcp3 fromPseudomonas aeruginosa

Jerzy Osipiuk, Xiaohui Xu, Hong Cui, Alexei Savchenko, Aled Edwards, Andrzej Joachimiak

Journal:

Journal of Structural and Functional Genomics

Year:

2011

Language:

english

File:

PDF, 823 KB

english, 2011

19

Crystal structure of a putative isochorismatase hydrolase fromOleispira antarctica

Anna M. Goral, Karolina L. Tkaczuk, Maksymilian Chruszcz, Olga Kagan, Alexei Savchenko, Wladek Minor

Journal:

Journal of Structural and Functional Genomics

Year:

2012

Language:

english

File:

PDF, 1.56 MB

english, 2012

20

Dissecting the nucleotide binding properties of Escherichia coli 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase with fluorescent 3′(2)′-o-anthraniloyladenosine 5′-triphosphate

Genbin Shi, Yunchen Gong, Alexei Savchenko, J.Gregory Zeikus, Bing Xiao, Xinhua Ji, Honggao Yan

Journal:

Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology

Year:

2000

Language:

english

File:

PDF, 297 KB

english, 2000

21

Type III Effector NleH2 from Escherichia coli O157:H7 str. Sakai Features an Atypical Protein Kinase Domain

Halavaty, Andrei S., Anderson, Spencer M., Wawrzak, Zdzislaw, Kudritska, Marina, Skarina, Tatiana, Anderson, Wayne F., Savchenko, Alexei

Journal:

Year:

2014

Language:

english

File:

PDF, 1.22 MB

english, 2014

22

Rifampin phosphotransferase is an unusual antibiotic resistance kinase

Stogios, Peter J., Cox, Georgina, Spanogiannopoulos, Peter, Pillon, Monica C., Waglechner, Nicholas, Skarina, Tatiana, Koteva, Kalinka, Guarné, Alba, Savchenko, Alexei, Wright, Gerard D.

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 1.80 MB

english, 2016

23

Galectin-9 binds IgM-BCR to regulate B cell signaling

Cao, Anh, Alluqmani, Nouf, Buhari, Fatima Hifza Mohammed, Wasim, Laabiah, Smith, Logan K., Quaile, Andrew T., Shannon, Michael, Hakim, Zaki, Furmli, Hossai, Owen, Dylan M., Savchenko, Alexei, Treanor,

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 5.17 MB

english, 2018

24

The crystal structure of the AF2331 protein from Archaeoglobus fulgidus DSM 4304 forms an unusual interdigitated dimer with a new type of α + β fold

Shuren Wang, Olga Kirillova, Maksymilian Chruszcz, Dominik Gront, Matthew D. Zimmerman, Marcin T. Cymborowski, Igor A. Shumilin, Tatiana Skarina, Elena Gorodichtchenskaia, Alexei Savchenko, Aled M. Ed

Journal:

Protein Science

Year:

2009

Language:

english

File:

PDF, 456 KB

english, 2009

25

Crystal Structure of the Vitamin B12Biosynthetic Cobaltochelatase, CbiXS, fromArchaeoglobus Fulgidus

Jiang Yin, Linda X. Xu, Maia M. Cherney, Evelyne Raux-Deery, Amanda A. Bindley, Alexei Savchenko, John R. Walker, Marianne E. Cuff, Martin J. Warren, Michael N. G. James

Journal:

Journal of Structural and Functional Genomics

Year:

2006

Language:

english

File:

PDF, 921 KB

english, 2006

26

The X-ray crystal structure of PA1607 from Pseudomonas aureginosa at 1.9 Å resolution—a putative transcription factor

Edyta A.L. Sieminska, Xiaohui Xu, Alexei Savchenko, David A.R. Sanders

Journal:

Protein Science

Year:

2007

Language:

english

File:

PDF, 632 KB

english, 2007

27

Crystal complexes of a predicted S-adenosylmethionine-dependent methyltransferase reveal a typical AdoMet binding domain and a substrate recognition domain

Darcie J. Miller, Nancy Ouellette, Elena Evdokimova, Alexei Savchenko, Aled Edwards, Wayne F. Anderson

Journal:

Protein Science

Year:

2003

Language:

english

File:

PDF, 1.83 MB

english, 2003

28

Structural characterization of the putative ABC-type 2 transporter fromThermotoga maritimaMSB8

Filippova, Ekaterina V., Tkaczuk, Karolina L., Chruszcz, Maksymilian, Xu, Xiaohui, Savchenko, Alexei, Edwards, Aled, Minor, Wladek

Journal:

Journal of Structural and Functional Genomics

Year:

2014

Language:

english

File:

PDF, 752 KB

english, 2014

29

Structure and activity of the Pseudomonas aeruginosa hotdog-fold thioesterases PA5202 and PA2801

Gonzalez, Claudio F., Tchigvintsev, Anatoli, Brown, Greg, Flick, Robert, Evdokimova, Elena, Xu, Xiaohui, Osipiuk, Jerzy, Cuff, Marianne E., Lynch, Susan, Joachimiak, Andrzej, Savchenko, Alexei, Yakuni

Journal:

Biochemical Journal

Year:

2012

Language:

english

File:

PDF, 1.35 MB

english, 2012

30

Rox, a Rifamycin Resistance Enzyme with an Unprecedented Mechanism of Action

Koteva, Kalinka, Cox, Georgina, Kelso, Jayne K., Surette, Matthew D., Zubyk, Haley L., Ejim, Linda, Stogios, Peter, Savchenko, Alexei, Sørensen, Dan, Wright, Gerard D.

Journal:

Cell Chemical Biology

Year:

2018

Language:

english

File:

PDF, 2.25 MB

english, 2018

31

Crystal structure of the Legionella pneumophila lem10 effector reveals a new member of the HD protein superfamily

Morar, Mariya, Evdokimova, Elena, Chang, Changsoo, Ensminger, Alexander W., Savchenko, Alexei

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2015

Language:

english

File:

PDF, 412 KB

english, 2015

32

Structure-guided optimization of protein kinase inhibitors reverses aminoglycoside antibiotic resistance

Stogios, Peter J., Spanogiannopoulos, Peter, Evdokimova, Elena, Egorova, Olga, Shakya, Tushar, Todorovic, Nick, Capretta, Alfredo, Wright, Gerard D., Savchenko, Alexei

Journal:

Biochemical Journal

Year:

2013

Language:

english

File:

PDF, 1.71 MB

english, 2013

33

Crystal Structure of RNase T, an Exoribonuclease Involved in tRNA Maturation and End Turnover

Yuhong Zuo, Heping Zheng, Yong Wang, Maksymilian Chruszcz, Marcin Cymborowski, Tatiana Skarina, Alexei Savchenko, Arun Malhotra, Wladek Minor

Journal:

Year:

2007

Language:

english

File:

PDF, 2.10 MB

english, 2007

34

The crystal structure of pyrimidine/thiamin biosynthesis precursor-like domain-containing protein CAE31940 from proteobacteriumBordetella bronchisepticaRB50, and evolutionary insight into the NMT1/THI5 family

Bajor, Jacek, Tkaczuk, Karolina L., Chruszcz, Maksymilian, Chapman, Hutton, Kagan, Olga, Savchenko, Alexei, Minor, Wladek

Journal:

Journal of Structural and Functional Genomics

Year:

2014

Language:

english

File:

PDF, 6.60 MB

english, 2014

35

Crystal structure of a putative transcriptional regulator SCO0520 fromStreptomyces coelicolorA3(2)reveals an unusual dimer among TetR family proteins

Ekaterina V. Filippova, Maksymilian Chruszcz, Marcin Cymborowski, Jun Gu, Alexei Savchenko, Aled Edwards, Wladek Minor

Journal:

Journal of Structural and Functional Genomics

Year:

2011

Language:

english

File:

PDF, 2.19 MB

english, 2011

36

Crystal structures of TM0549 and NE1324—two orthologs of E. coli AHAS isozyme III small regulatory subunit

Janusz J. Petkowski, Maksymilian Chruszcz, Matthew D. Zimmerman, Heping Zheng, Tatiana Skarina, Olena Onopriyenko, Marcin T. Cymborowski, Katarzyna D. Koclega, Alexei Savchenko, Aled Edwards, Wladek M

Journal:

Protein Science

Year:

2007

Language:

english

File:

PDF, 478 KB

english, 2007

37

Riboneogenesis in Yeast

Michelle F. Clasquin, Eugene Melamud, Alexander Singer, Jessica R. Gooding, Xiaohui Xu, Aiping Dong, Hong Cui, Shawn R. Campagna, Alexei Savchenko, Alexander F. Yakunin, Joshua D. Rabinowitz, Amy A. C

Journal:

Year:

2011

Language:

english

File:

PDF, 1.41 MB

english, 2011

38

Structural and Biochemical Study of Effector Molecule Recognition by the E. coli Glyoxylate and Allantoin Utilization Regulatory Protein AllR

John R. Walker, Svetlana Altamentova, Alexandra Ezersky, Graciela Lorca, Tatiana Skarina, Marina Kudritska, Linda J. Ball, Alexey Bochkarev, Alexei Savchenko

Journal:

Journal of Molecular Biology

Year:

2006

Language:

english

File:

PDF, 943 KB

english, 2006

39

PoxA, YjeK, and Elongation Factor P Coordinately Modulate Virulence and Drug Resistance in Salmonella enterica

William Wiley Navarre, S. Betty Zou, Hervé Roy, Jinglin Lucy Xie, Alexei Savchenko, Alexander Singer, Elena Edvokimova, Lynne R. Prost, Runjun Kumar, Michael Ibba, Ferric C. Fang

Journal:

Year:

2010

Language:

english

File:

PDF, 1.07 MB

english, 2010

40

Thermotoga neapolitana adenylate kinase is highly active at 30 degreesC

VIEILLE, Claire, KRISHNAMURTHY, Harini, HYUN, Hyung-Hwan, SAVCHENKO, Alexei, YAN, Honggao, ZEIKUS, J. Gregory

Journal:

Biochemical Journal

Year:

2003

Language:

english

File:

PDF, 252 KB

english, 2003

41

Structural and biochemical characterization of Acinetobacter spp. aminoglycoside acetyltransferases highlights functional and evolutionary variation among antibiotic resistance enzymes

Stogios, Peter J, Kuhn, Misty Lee, Evdokimova, Elena, Law, Melissa, Courvalin, Patrice, Savchenko, Alexei

Journal:

ACS Infectious Diseases

Year:

2016

Language:

english

File:

PDF, 35.48 MB

english, 2016

42

Substrate specificity, regiospecificity, and processivity in glycoside hydrolase family 74

Arnal, Gregory, Stogios, Peter J., Asohan, Jathavan, Attia, Mohamed, Skarina, Tatiana, Viborg, Alexander Holm, Henrissat, Bernard, Savchenko, Alexei, Brumer, Harry

Journal:

Journal of Biological Chemistry

Year:

2019

Language:

english

File:

PDF, 1.70 MB

english, 2019

43

Structural characterization of aminoglycoside 4′‐O‐adenylyltransferase ANT(4′)‐IIb from Pseudomonas aeruginosa

Semper, Cameron, Stogios, Peter, Meziane‐Cherif, Djalal, Evdokimova, Elena, Courvalin, Patrice, Savchenko, Alexei

Journal:

Protein Science

Year:

2019

File:

PDF, 1.52 MB

2019

44

NMR and X-ray Crystallography, Complementary Tools in Structural Proteomics of Small Proteins

Yee, Adelinda A., Savchenko, Alexei, Ignachenko, Alexandr, Lukin, Jonathan, Xu, Xiaohui, Skarina, Tatiana, Evdokimova, Elena, Liu, Cheng Song, Semesi, Anthony, Guido, Valerie, Edwards, Aled M., Arrows

Journal:

Journal of the American Chemical Society

Year:

2005

Language:

english

File:

PDF, 221 KB

english, 2005

45

Structural and functional insight into the universal stress protein family

Tkaczuk, Karolina L., A. Shumilin, Igor, Chruszcz, Maksymilian, Evdokimova, Elena, Savchenko, Alexei, Minor, Wladek

Journal:

Evolutionary Applications

Year:

2013

Language:

english

File:

PDF, 1.81 MB

english, 2013

46

Crystal structures of MTH1187 and its yeast ortholog YBL001c

Xiao Tao, Reza Khayat, Dinesh Christendat, Alexei Savchenko, Xiaohui Xu, Sharon Goldsmith-Fischman, Barry Honig, Aled Edwards, Cheryl H. Arrowsmith, Liang Tong

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 190 KB

english, 2003

47

Structure and activity of the Cas3 HD nuclease MJ0384, an effector enzyme of the CRISPR interference

Beloglazova, Natalia, Petit, Pierre, Flick, Robert, Brown, Greg, Savchenko, Alexei, Yakunin, Alexander F

Journal:

The EMBO Journal

Year:

2011

Language:

english

File:

PDF, 1.20 MB

english, 2011

48

Structural Analysis of HopPmaL Reveals the Presence of a Second Adaptor Domain Common to the HopAB Family of Pseudomonas syringae Type III Effectors

Singer, Alex U., Wu, Bin, Yee, Adelinda, Houliston, Scott, Xu, Xiaohui, Cui, Hong, Skarina, Tatiana, Garcia, Maite, Semesi, Anthony, Arrowsmith, Cheryl H., Savchenko, Alexei

Journal:

Year:

2012

Language:

english

File:

PDF, 1.16 MB

english, 2012

49

Structure-function analysis of a mixed-linkage Beta-glucanase/xyloglucanase from key ruminal Bacteroidetes Prevotella bryantii B 1 4

McGregor, Nicholas, Morar, Mariya, Fenger, Thomas Hauch, Stogios, Peter, Lenfant, Nicolas, Yin, Victor, Xu, Xiaohui, Evdokimova, Elena, Cui, Hong, Henrissat, Bernard, Savchenko, Alexei, Brumer, Harry

Journal:

Journal of Biological Chemistry

Year:

2015

Language:

english

File:

PDF, 7.83 MB

english, 2015

50

A Small Molecule Discrimination Map of the Antibiotic Resistance Kinome

Tushar Shakya, Peter J. Stogios, Nicholas Waglechner, Elena Evdokimova, Linda Ejim, Jan E. Blanchard, Andrew G. McArthur, Alexei Savchenko, Gerard D. Wright

Journal:

Chemistry & Biology

Year:

2011

Language:

english

File:

PDF, 1.35 MB

english, 2011

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